Next Generation Sequencing (NGS) Training (3 or 4 Days)

1.Genome assembly and annotation:

  •   File Formats

  •   Databasess

  •   Downloading Genome sequences

  •   Examining quality of reads

  •   Assembling reads into contigs

  •   Ordering contigs against a reference

  •   Assembly Metrics (Statistical View)

  •   Annotation

2.Comparative Genome Analysis:

  •   Downloading genome sequences for comparative analysis

  •   Multiple genome alignment

  •   Detailed pairwise genome comparisons

  •   Generating comparison files

  •   Viewing genome comparisons

  •   Reference-based comparisons of multiple sequences

3.Specialist Tools: